Nejc Stopnisek PhD
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2020
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2010
Synergistic epistasis enhances cooperativity of mutualistic interspecies interactions
Frequent fluctuations in sulfate availability rendered syntrophic interactions between the sulfate reducing bacterium
Desulfovibrio …
Serdar Turkarslan
,
Nejc Stopnisek
,
Anne W Thompson
,
Christina E Arens
,
Jacob J Valenzuela
,
James Wilson
,
Kristopher A Hunt
,
Jessica Hardwicke
,
Sujung Lim
,
Yee Mey Seah
,
Ying Fu
,
Liyou Wu
,
Jizhong Zhou
,
Kristina L Hillesland
,
David A Stahl
,
Nitin S Baliga
PDF
Code
Project
DOI
Prioritizing persistent microbiome members in the common bean rhizosphere: an integrated analysis of space, time, and plant genotype
Ongoing and magnifying consequences of environmental change present a complex challenge for plants, food security and sustainable …
Nejc Stopnisek
,
Ashley Shade
PDF
Code
DOI
Assembly and seasonality of core phyllosphere microbiota on perennial biofuel crops
Perennial grasses are promising feedstocks for biofuel 26 production, and there is potential to leverage their native microbiomes to …
Keara L Grady *
,
Jackson W. Sorensen *
,
Nejc Stopnisek
*
,
John Guittar
,
Ashley Shade
PDF
Code
DOI
Abundance-occupancy distributions to prioritize core microbiome membership
Core microbiomes are the consistent features of a dataset that are hypothesized to reflect underlying functional relationships with the …
Ashley Shade
,
Nejc Stopnisek
PDF
Code
DOI
Manipulating Wild and Tamed Phytobiomes: Challenges and Opportunities
This white paper presents a series of perspectives on current and future phytobiome management, discussed at the Wild and Tamed …
Terrence H Bell
,
Kevin Hockett
,
Ricardo Ivan Alcalá-Briseño
,
Mary Barbercheck
,
Gwyn A Beattie
,
Mary Ann Bruns
,
John Carlson
,
Taejung Chung
,
Alyssa Collins
,
Bryan Emmett
,
Paul Esker
,
Karen Garrett
,
Leland Glenna
,
Beth K Gugino
,
Maria del Mar Jimenez Gasco
,
Linda Kinkel
,
Jasna Kovac
,
Kurt Kowalski
,
Gretchen Kuldau
,
Johan Leveau
,
Matthew Michalska-Smith
,
Jessica Myrick
,
Kari Peter
,
Maria Vivanco Salazar
,
Ashley Shade
,
Nejc Stopnisek
,
Xiaoqing Tan
,
Amy Welty
,
Kyle Wickings
,
Etienne Yergeau
PDF
Ammonia‐oxidizing bacteria are the primary N2O producers in an ammonia‐oxidizing archaea dominated alkaline agricultural soil
Most agricultural N2O emissions are a consequence of microbial transformations of nitrogen (N) fertilizer, and mitigating increases in …
Kelley A Meinhardt,
Nejc Stopnisek
, Manmeet W Pannu, Stuart E Strand, Steven C Fransen, Karen L Casciotti, David A Stahl
PDF
DOI
Molecular mechanisms underlying the close association between soil Burkholderia and fungi
Bacterial species belonging to the genus
Burkholderia
have been repeatedly reported to be associated with fungi but the extent and …
Nejc Stopnisek
, Daniela Zühlke, Aurélien Carlier, Albert Barberán, Noah Fierer, Dörte Becher, Katharina Riedel, Leo Eberl, Laure Weisskopf
PDF
DOI
Genus‐wide acid tolerance accounts for the biogeographical distribution of soil Burkholderia populations
Bacteria belonging to the genus
Burkholderia
are highly versatile with respect to their ecological niches and lifestyles, ranging from …
Nejc Stopnisek
, Natacha Bodenhausen, Beat Frey, Noah Fierer, Leo Eberl, Laure Weisskopf
PDF
DOI
Oxalotrophy, a widespread trait of plant-associated Burkholderia species, is involved in successful root colonization of lupin and maize by Burkholderia phytofirmans
Plant roots and shoots harbour complex bacterial communities. Early seed and plantlet colonization plays a key role in determining …
Thomas Kost,
Nejc Stopnisek
, Kirsty Agnoli, Leo Eberl, Laure Weisskopf
DOI
Thaumarchaeal ammonia oxidation in an acidic forest peat soil is not influenced by ammonium amendment
Both bacteria and thaumarchaea contribute to ammonia oxidation, the first step in nitrification. The abundance of putative ammonia …
Nejc Stopnisek
, Cécile Gubry-Rangin, Spela Hoefferle, Graeme W Nicol, Ines Mandic-Mulec, James I Prosser
PDF
DOI
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